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PARma: identification of microRNA target sites in AGO-PAR-CLIP data

Florian Erhard1*, Lars Dölken2, Lukasz Jaskiewicz3 and Ralf Zimmer1

Author Affiliations

1 Institut für Informatik, Ludwig-Maximilians-Universität München, Amalienstrasse 17, 80333 Munich, Germany

2 Department of Medicine, University of Cambridge, Box 157, Level 5, Addenbrooke's Hospital, Hills Road, CB2 0QQ Cambridge, UK

3 Biozentrum, University of Basel and Swiss Institute of Bioinformatics, Klingelbergstr. 50/70, CH-4056, Basel, Switzerland

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Genome Biology 2013, 14:R79  doi:10.1186/gb-2013-14-7-r79

Published: 29 July 2013

Additional files

Additional file 1:

Zip file containing the runnable PARma pipeline including documentation and source code.

Format: ZIP Size: 4.4MB Download file

Open Data