Analysis of mouse ENCODE histone ChIP-seq datasets. (a) List of combinatorial patterns identified by jMOSAiCS. Patterns 1 to 6 are also identified by chromHMM. (b) Changes in chromatin states between G1E and G1E-ER4+E2 cells for DNA segments occupied by GATA1 in the latter cells. (c) Heatmap of normalized raw data for a group of 311 GATA1-occupied segments identified to switch from 1101 in G1E cells to 1111 in G1E-ER4+E2 cells by jMOSAiCS. Enriched regions (excluding segments longer than 1,400 bp in size) identified across different marks are aligned and depicted in between the dashed lines.
Zeng et al. Genome Biology 2013 14:R38 doi:10.1186/gb-2013-14-4-r38