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ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

Guoliang Li, Melissa J Fullwood, Han Xu, Fabianus Hendriyan Mulawadi, Stoyan Velkov, Vinsensius Vega, Pramila Nuwantha Ariyaratne, Yusoff Bin Mohamed, Hong-Sain Ooi, Chandana Tennakoon, Chia-Lin Wei, Yijun Ruan* and Wing-Kin Sung*

Genome Biology 2010, 11:R22  doi:10.1186/gb-2010-11-2-r22

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Underlying mapping algorithm Batman still unpublished.

Alejandro Fernandez   (2015-03-04 09:35)  Karolinska Institutet email

"After linker trimming, the tags are mapped to the corre-sponding reference genome using the Batman package (CTennakoon et al., manuscript submitted) with at most one mismatch."  

I was unable to find references or any documentation regarding Batman, has this been documented? Does the tool work with BWA or Bowtie? 


Competing interests

None declared


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