Figure 3.

Scatter plots between LDsplit's q-values that are less than 0.1 and Haplotter's iHS scores. The three columns are, respectively, hotspot-SNP pairs where the SNP-derived allele is cold, hot, and both; the three rows correspond to three ranges of hotspot-SNP physical distances D. The red line in each panel is the least square regression line, and R2 at the top is the coefficient of determination, measuring the fraction of variance of iHS scores explained by q-values.

Zheng et al. Genome Biology 2010 11:R103   doi:10.1186/gb-2010-11-10-r103
Download authors' original image