Empirical FDR of CSDeconv. (a, b) The empirical FDR for enriched regions as a function of LLR threshold is shown for the (a) DosR and (b) GABP datasets. (c, d) With the LLR threshold fixed, the empirical FDR for binding sites as a function of the regularization factor α is shown for the (c) DosR dataset (LLR threshold at 18.75) and the (d) GABP dataset (LLR threshold at 38.5).
Lun et al. Genome Biology 2009 10:R142 doi:10.1186/gb-2009-10-12-r142