Figure 4.

Yeast GO molecular function schema timings. All possible triangular, 4-node linear, and 4-node branched schemas ('Y-star') with nodes described via GO molecular function slim terms were run systematically on NetGrep. Results are reported for those schemas with at least 5 but no more than 80,000 instances in S. cerevisiae: 780 triangular schemas; 80,719 4-node linear schemas; and 30,642 4-node branched schemas. Boxplots of the running times for each topology are given; boxplots are a convenient way of depicting the smallest observation, second quartile, median, third quartile, and largest observation in the data.

Banks et al. Genome Biology 2008 9:R138   doi:10.1186/gb-2008-9-9-r138
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