Table 1

High-throughput sequencing detected reads from PAR-CLIP background samples are abundant
Total reads (PARalyzer utilized) Unique sites (Locations)
G20 38,644,636 706,883
G35 6,187,300 259,337
G45 7,539,669 379,718
HuR.rep1 9,525,625 2,411,483
HuR.rep2 32,111,810 4,024,972
Total 35,924,998 2,857,291

Total PARalyzer Utilized Reads from three background samples were derived from the G20, G35 and G45 slices, two HuR replicates and a Total sample from 4SU-incorprated, UV 365 nm cross-linked and RNase T1 digested lysates that have been depleted for rRNA. Unique Locations are genomic sites derived after accounting for overlapping reads.

Friedersdorf and Keene

Friedersdorf and Keene Genome Biology 2014 15:R2   doi:10.1186/gb-2014-15-1-r2

Open Data