Additional File 9.

Results of differential gene expressed analysis for all possible pairwise comparisons. Genes significantly differentially regulated (FDR <0.01) by Cuffdiff for each of the 42 pairwise comparisons among time points. For each gene, gene ID, locus position, sample 1 name, sample 2 name, sample 1 FPKM, sample 2 FPKM, log fold change (log2(FPKM_2/FPKM_1)), test statistic, uncorrected P-value and corrected P-value (for FDR <0.01) are shown.

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Ehrenkaufer et al. Genome Biology 2013 14:R77   doi:10.1186/gb-2013-14-7-r77