Additional File 4.
Read counts, normalized gene expression levels, temporal expression profiles and significant differential expression versus baseline expression for all 11,549 loci. Table showing expression data for 11,549 annotated E. invadens genes. For each gene, the gene ID, product description and genomic location are shown, along with read counts in each gene for each sample, normalized gene expression levels (fragments per kilobase per million mapped reads (FPKM)), lower and upper bounds of the 95% confidence interval ('FPKM_conf_low' and 'FPKM_conf_high') for each time point, temporal gene expression profiles (profile IDs relate to profiles shown in Additional file 1) and significantly differentially expressed genes compared to expression in trophozoites or 72 h cysts (for encystation and excystation, respectively).
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Ehrenkaufer et al. Genome Biology 2013 14:R77 doi:10.1186/gb-2013-14-7-r77