Additional file 9.

Primer extension assays for non-canonical snoRNA targets. Primer extension runs reveal 2'-O-methyl (A-C) and pseudouridine (D-G) modification sites in several non-canonical RNAs. (A) SNORA61: G50. (B) VTRNA1-2: G30, U31, C33, A34. (C) 7SK RNA: C137, G139, C141, G148, C150, G151. (D) SNORD16: U52, U55. (E) SNORD35A: U26, U31, U37, U43, U45, U51. (F) 7SK RNA: U250. (G) 7SL RNA: U226, U233, U236, U266, U273.

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Kishore et al. Genome Biology 2013 14:R45   doi:10.1186/gb-2013-14-5-r45