Figure 2.

SNPs, indels, and structural variants (SVs) in the FVB/NJ mouse, in two narrowed regions of the chromosome 10 Ath11 locus. (a) The 10a locus from 1 to 7.3 Mb. (b) The 10b locus from 20.1 to 21.9 Mb. (c) Within the 10a region is the Mthdf1l gene, with non-synonymous and synonymous SNPs shown. Shown in red are non-synonymous SNPs or SNPs that affect intronic splice sites. In green are synonymous SNPs. In blue are gene models based on Ensembl version 64. Previously known FVB/NJ SNPs from dbSNP version 128 are also shown. The 10a region displayed in (a) begins at 3 Mb since the sequence from 1 bp to 3 Mb has not been assembled in the reference genome. Shown in the 10b region are the genes described in Wolfrum et al. [34] (Pde7b, Ahi1, Myb, Hbs1l, Aldh8a1, Sgk1), and additional predicted genes from Ensembl (1700020N01Rik, 1700021A07Rik, Gm5420, 4930444G20Rik, E030030I06Rik).

Wong et al. Genome Biology 2012 13:R72   doi:10.1186/gb-2012-13-8-r72
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