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RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations

Mauro AA Castro, Xin Wang, Michael NC Fletcher, Kerstin B Meyer and Florian Markowetz*

Author Affiliations

Cancer Research UK Cambridge Research Institute and Department of Oncology, University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK

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Genome Biology 2012, 13:R29  doi:10.1186/gb-2012-13-4-r29

Published: 24 April 2012

Additional files

Additional file 1:

Pre-processed data analysis. PDF document describing the pre-processed data analysis, including three examples illustrating how RedeR can be integrated with other R packages.

Format: PDF Size: 165KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Benchmark source code. R script used to run the benchmark analysis.

Format: R Size: 9KB Download file

Open Data

Additional file 3:

Complementary benchmark source code. R script with complementary R functions required in the benchmark.

Format: R Size: 4KB Download file

Open Data