Effect of the neighborhood definition on the scoring function applied to the Gasch et al. dataset . The y-axis is the number of significant seeds (7-mers) detected at different FDR thresholds (x-axis). (Left) Mutual information scoring function. (Right) Hypergeometric scoring function.
Lajoie et al. Genome Biology 2012 13:R109 doi:10.1186/gb-2012-13-11-r109