This article is part of a special issue on epigenomics.
CHANCE: comprehensive software for quality control and validation of ChIP-seq data
1 Institute for Human Genetics, UCSF, 513 Parnassus Avenue, Box 0794, San Francisco, CA 94143-0794, USA
2 The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, UCSF, 35 Medical Center Way, San Francisco, CA 94143-0525, USA
3 Department of Epidemiology and Biostatistics, UCSF, 185 Berry Street, Lobby 5, Suite 5700, San Francisco, CA 94107, USA
4 Department of Bioengineering and Therapeutic Sciences, UCSF, 513 Parnassus Avenue, San Francisco, CA 94143-0912, USA
Genome Biology 2012, 13:R98 doi:10.1186/gb-2012-13-10-r98Published: 15 October 2012
Additional file 1:
CHANCE feature comparison table.
Format: PDF Size: 66KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 2:
CHANCE training data table. This file enumerates the experiment information and url for each ENCODE sample used in either the training data set for the false discovery rate computation in the "IP enrichment" module or the "Comparison with ENCODE module".
Format: XLSX Size: 152KB Download file