Additional file 7.

Model 2 (Jamshidi and Palsson [14]) in SBML. The model contains 937 reactions and 825 metabolites. Each reaction is annotated with its confidence score, the proteins needed to catalyze it, the Boolean expression containing the genes it requires, the name and chemical equation of the reaction, and the subsystem to which it belongs, whenever these are known. Each metabolite is annotated with its abbreviation, official name, molecular formula and charge, IUPAC name, CAS number, and BioCyc and KEGG database identifiers, whenever these are known.

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Chindelevitch et al. Genome Biology 2012 13:r6   doi:10.1186/gb-2012-13-1-r6