Additional file 6.
Quaking (QKI) motif prediction. cERMIT calculated motif logo for QKI based on the PARalyzer generated interaction sites. For this analysis, we used interaction sites that contained at least five reads, mapped to a genic region, contained at least two T = > C conversions and did not overlap a repeat region.
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Corcoran et al. Genome Biology 2011 12:R79 doi:10.1186/gb-2011-12-8-r79