Additional file 1.

Texts S1 to S4. Text S1: description of the analysis of repetitive elements contributing to non-unique alignments. Text S2: details of our Bayesian probability model for SNP detection. Text S3: performance estimates based on comparison to the Sanger validated data set reported in Harsimendy et al. [9]. Text S4: performance estimates obtained when varying the expected base-call sequencing error rate parameter compared to actual error rate.

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Simola and Kim Genome Biology 2011 12:R55   doi:10.1186/gb-2011-12-6-r55