Additional file 9.

Figure S5. Comparison of the extent and frequency of homozygous segments with haplotypes underlying extAUC peaks. Analysis of the consistency of the homozygous extent distribution and length and frequency of haplotypes for extAUC peaks in YRI, CEU, CHB, and JPT. Minimum segment length (Extentmin), expected haplotype frequency (Freqhap-exp), and maximum haplotype frequency (Freqhap-max) were calculated as diagrammed in Figure 5 for peaks dichotomized into non-outlier and outlier peaks. Data points were colored using a two-dimesnional density estimate using R's function densCols with nbin = 1,024.

Format: PDF Size: 231KB Download file

This file can be viewed with: Adobe Acrobat Reader

Johnson et al. Genome Biology 2011 12:R21   doi:10.1186/gb-2011-12-3-r21