Additional file 1.
Figure S1. Genome-wide plot of greater confidence homozygous segments. The chromosomal positions of homozygous segments with length ≥MISLchr were plotted for all 269 samples (arrayed along the y-axis). The relative SNP density compared to the maximum for that chromosome is plotted at the top of each panel. Homozygous segments were color-coded depending on different status types. Red lines, homozygous segments ≥MISLchr; green lines, putative autozygous segments (MAD score >10); yellow lines, ≤0.2 SNP/kb; blue line, high missingness (no-call rate >0.05); orange lines, sample level CNVs.
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Johnson et al. Genome Biology 2011 12:R21 doi:10.1186/gb-2011-12-3-r21