Additional file 6.
Domain losses and corresponding GO terms during eukaryote evolution. Summary of conditions used: protein predictions as listed in Additional file 1, model of eukaryote evolution as shown in Figure 2 (and more detailed in Additional files 3 and 4), domain models from Pfam 24.0, analyzed with HMMER 3.0b2, Pfam 'gathering' cutoffs, 'pfam2go' mappings dated 2009/10/01. GO namespaces are abbreviated as follows: B, biological process; C, cellular component; M, molecular function.
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Zmasek and Godzik Genome Biology 2011 12:R4 doi:10.1186/gb-2011-12-1-r4