Additional file 10.
Table of enriched gained and lost GO terms under a 'crown group' model. The two terms with the lowest P-values are shown. Summary of conditions used: protein predictions as listed in Additional file 1, domain models from Pfam 24.0, analyzed with HMMER 3.0b2, Pfam 'gathering' cutoffs, model of eukaryote evolution as shown in Additional file 8, 'pfam2go' mappings dated 2009/10/01, Ontologizer 2.0 with Topology-Elim algorithm.
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Zmasek and Godzik Genome Biology 2011 12:R4 doi:10.1186/gb-2011-12-1-r4