Additional data file 2.

Supplementary Figure 1 shows consensus sequences and HMM logos of P. fluorescens intergenic repeat families. Supplementary Figure 2 shows pie chart analyses of the CDS orientations in the three P. fluorescens strains. Left side, CDSs not flanking intergenic repeats; right side, CDS pairs flanking intergenic repeats. The orientation of the CDSs flanking intergenic repeats has a clear bias to the Tail-repeat-Tail (-> <-) orientation when compared to those CDSs that do not flank intergenic repeats. Supplementary Figure 3 shows the distribution of possible orientations of CDS pairs flanking each repeat sequence family, in (a) SBW25 and (b) Pf0-1.

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Silby et al. Genome Biology 2009 10:R51   doi:10.1186/gb-2009-10-5-r51