Comparison of amino acid matches between the complete six-frame translations of the whole genome sequences of P. fluorescens Pf0-1, SBW25 and Pf-5 genomes. The analysis was carried out using Artemis Comparison Tool and computed using TBLASTX. Forward and reverse strands of DNA are shown for each genome (dark grey lines). The red bars between the DNA lines represent individual TBLASTX matches, with inverted matches colored blue. Graphs show the density of CDSs with orthologues in the other two P. fluorescens strains (red and green lines). Window size is shown on the graphs. The thin grey lines show the genome average orthologue density. The white boxes on the DNA lines represent the variable regions around the termini as defined by these graphs (SBW25, 2.7 Mb; Pf0-1, 2 Mb; and Pf-5, 2.65 Mb). Blue and pink boxes represent the position of atypical regions and prophage, respectively.
Silby et al. Genome Biology 2009 10:R51 doi:10.1186/gb-2009-10-5-r51