Additional file 5.
The HiLo, MeLo, and HiMe columns are log2 ratios of gene-expression indices in comparisons of pH 6.0 (Hi), pH 4.5 (Me), and pH 2.5 (Lo). Negative values mean that the index was higher in the second condition. If the comparison was not significant, a N/A is shown. Annotations are manually extracted from the Joint Genome Institute (JGI) website  and are the manual annotation (if that was present), or a general Interpro or GO-term prediction (if no manual annotation was present). A '-' means that no putative function could be assigned. The Colocalized column: Genes with the same number are colocalized. The Sec Metabolites column: Genes that are believed to be in a colocalized, co-regulated secondary metabolite cluster are marked with numbers.
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Andersen et al. Genome Biology 2009 10:R47 doi:10.1186/gb-2009-10-5-r47