The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
1 RIKEN Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho Tsurumi-ku Yokohama, Kanagawa, 230-0045 Japan
2 Institute for Molecular Bioscience, University of Queensland, Brisbane, St Lucia QLD 4072, Australia
3 The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Roslin, EH259PS, UK
4 The Eskitis Institute for Cell and Molecular Therapies, Griffith University, QLD 4111, Australia
Genome Biology 2009, 10:R40 doi:10.1186/gb-2009-10-4-r40Published: 19 April 2009
In FANTOM4, an international collaborative research project, we collected a wide range of genome-scale data, including 24 million mRNA 5'-reads (CAGE tags) and microarray expression profiles along a differentiation time course of the human THP-1 cell line and under 52 systematic siRNA perturbations. In addition, data regarding chromatin status derived from ChIP-chip to elucidate the transcriptional regulatory interactions are included. Here we present these data to the research community as an integrated web resource.