Additional data file 3.

Columns indicate Affymetrix probe set identifier (1 Affy id), chip set (2 chip), gene symbol (3 gene), and marker server pattern identifier chosen (4 pattern). Columns five and six are related to the clustering analysis (see Materials and methods): National Center for Biotechnology Information NCBI identifier for the protein sequence used (5 protein) and label for the protein cluster (6 cluster). Columns seven to 18 indicate segregation (value of 1) in pairs of stem cell samples and their differentiated derivatives, respectively: J1 mESC (7 J1-U and 8 J1-D), V6.5 mESC (9 V6.5-U and 10 V6.5-D), mast cell precursors (11 Mast-U and 12 Mast-D), mammospheres (13 MaSC-U and 14 MaSC-D), osteoblasts (15 Osteo-U and 16 Osteo-D), and hematopoietic cells (17 HSC-U and 18 HSC-D). Column 19 (multi) indicates (value 0/1) 17 genes differentially expressed along multiple stem cell lineages (one at least being non-mESC). Samples used were S255 versus S256 for mammary stem cells (undifferentiated and differentiated, respectively), S294 versus five samples (S291, S292, S293, S295, and S296) for hematopoietic stem cells (HSC), S128 versus S127 for J1 ESCs, S153 versus S175 for V6.5 ESCs, S185 versus S196 for osteoblasts, and S236 versus S237 for mast cells.

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Krzyzanowski and Andrade-Navarro Genome Biology 2007 8:R193   doi:10.1186/gb-2007-8-9-r193