Figure 3.

DDM-MDS plot of the TFBS associations found in the p53 dataset. Associated with up-regulation we find binding sites for several CEBPs, STATs and HNFs. Associated with down-regulation we observe binding sites for E2F, ZF5 AP-2alpha and AP-2gamma. The parameters for Match were set to 0.9 for core similarity and 0.75 for matrix similarity. See Figure 2 for the procedure followed.

De Bleser et al. Genome Biology 2007 8:R83   doi:10.1186/gb-2007-8-5-r83
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