Email updates

Keep up to date with the latest news and content from Genome Biology and BioMed Central.

Open Access Highly Accessed Open Badges Research

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

Carleton L Kingsford*, Kunmi Ayanbule and Steven L Salzberg

Author Affiliations

Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA

For all author emails, please log on.

Genome Biology 2007, 8:R22  doi:10.1186/gb-2007-8-2-r22

Published: 21 February 2007

Additional files

Additional data file 1:

Complete C++ source code for the TransTermHP system.

Format: ZIP Size: 844KB Download file

Open Data

Additional data file 2:

As described in the text, the entire robust tail-to-tail region is searched; if the region is less than 500 nt, then the 500 nt downstream of the stop codon is searched (stopping if a gene start is encountered). In the case of ties, all terminators with the high score are output.

Format: ZIP Size: 9MB Download file

Open Data

Additional data file 3:

Accession and version numbers for the sequences of each genome used.

Format: TXT Size: 24KB Download file

Open Data

Additional data file 4:

Best terminators found downstream of each of the genes of the 343 organisms studied.

Format: ZIP Size: 29MB Download file

Open Data