Table 4 

Estimated parameter values for the exponential model of RTR and InDel rate 

Model for mean 
Model for median 




TFBS name 
a 
b 
a 
b 


E2F 
0.216 
0.226 
0.181 
0.184 
Myc 
0.252 
0.252 
0.265 
0.265 
NFκB 
0.072 
0.072 
0.035 
0.035 


Simulation results suggested that the TFBS RTR can be modeled by an exponential function of InDel rates given in equation 5. The values for parameters a and b were estimated from observed mean and median values of RTRs at different InDel rates. 

Huang et al. Genome Biology 2007 8:R225 doi:10.1186/gb2007810r225 