Figure 5.

An incorrect alignment from Pairagon. The seed alignment from BLASTN aligned the 112-base exon at a location about 30 kb upstream (arrow in Pairagon gene prediction) instead of the annotated location (arrows in Gencode reference genes). Both alignments for that exon are 100% identical. (Screen shot obtained from UCSC Genome Browser web site [23].)

Arumugam et al. Genome Biology 2006 7(Suppl 1):S5   doi:10.1186/gb-2006-7-s1-s5